PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g16060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LSD
Protein Properties Length: 143aa    MW: 15851.5 Da    PI: 9.7537
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g16060genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.2e-135377125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                Cg+Cr lLsYP GA++V+C++C+tV
  CA02g16060 53 CGSCRQLLSYPQGAKLVKCPCCQTV 77
                ************************9 PP

2zf-LSD146.36.8e-1591115125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 CggC +lL+YP+GApsVRC++C ++
  CA02g16060  91 CGGCAVLLMYPYGAPSVRCSSCRHM 115
                 **********************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.2E-165080IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-115377IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.5E-1088116IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-1291114IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEMGSKQEGT KNEEVRPQIE KQPMPYLRQM KPIMPQSSSH AATVSAEMGQ MVCGSCRQLL  60
SYPQGAKLVK CPCCQTVNLV LEAQYVGQVK CGGCAVLLMY PYGAPSVRCS SCRHMTKIGA  120
HNRRPPQSVQ QPRRRHPSYQ VR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-42HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559482.11e-100PREDICTED: uncharacterized protein LOC107859099 isoform X5
RefseqXP_016559480.11e-100PREDICTED: uncharacterized protein LOC107859099 isoform X3
SwissprotO654266e-36LOL2_ARATH; Protein LOL2
TrEMBLM1CWQ72e-89M1CWQ7_SOLTU; Uncharacterized protein
TrEMBLM1CWQ81e-88M1CWQ8_SOLTU; Uncharacterized protein
TrEMBLM1CWQ91e-88M1CWQ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000764223e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA116422223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-32lsd one like 2